:orphan:

Example applications
========================






.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Illustrates how adaptation parameters affect the generated mesh">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_MeshAdaptation_thumb.gif
    :alt:

  :ref:`sphx_glr_auto_examples_plot_MeshAdaptation.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Adaptation parameters</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Illustrates setting up a simulation and solving at a single time step">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_singleStep_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_plot_singleStep.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Single timestep</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Programmatically generate micro-macro electrode array">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_dbs_probe_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_plot_dbs_probe.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">DBS Electrode</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Compare performance as mesh resolution increases. Generates ch3-4 data.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_comparisons_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_plot_comparisons.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Depth sweep</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Get a detailed sweep of the behavior as element l0 approaches the source&#x27;s radius">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_singularityEffect_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_plot_singularityEffect.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Singularity</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="A simplified view of the meshing process, electrical network generation,  and solution">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_algorithmOverview_thumb.gif
    :alt:

  :ref:`sphx_glr_auto_examples_plot_algorithmOverview.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Simulation overview</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/plot_MeshAdaptation
   /auto_examples/plot_singleStep
   /auto_examples/plot_dbs_probe
   /auto_examples/plot_comparisons
   /auto_examples/plot_singularityEffect
   /auto_examples/plot_algorithmOverview

Geometry
=================
Interfacing with externally-defined geometries.


.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Original text layout in Inkscape, text bounds resampled using Roughen path effect with all disp...">

.. only:: html

  .. image:: /auto_examples/Geometry/images/thumb/sphx_glr_plot_xcellLogo_thumb.gif
    :alt:

  :ref:`sphx_glr_auto_examples_Geometry_plot_xcellLogo.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Logo</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Original mesh, generated from MRI data, is available at `&lt;https://3dprint.nih.gov/discover/3DPX...">

.. only:: html

  .. image:: /auto_examples/Geometry/images/thumb/sphx_glr_plot_brainStyle_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_Geometry_plot_brainStyle.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Stylized brain</div>
    </div>


.. raw:: html

    </div>

NEURON
========
Interfacing with compartmental models.


.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Plot LFP from toy neurons">

.. only:: html

  .. image:: /auto_examples/NEURON/images/thumb/sphx_glr_plot_LFP_thumb.gif
    :alt:

  :ref:`sphx_glr_auto_examples_NEURON_plot_LFP.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">LFP estimation with dynamic remeshing</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:
   :includehidden:


   /auto_examples/Geometry/index.rst
   /auto_examples/NEURON/index.rst


.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-gallery

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_